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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Gene name
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Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
BIOMEDICAL RESEARCH
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137 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
ACOXL
ENSSSCG00000037846
ENSG00000153093
Acyl-CoA oxidase like
Group enriched
Detected in some
ductus deferens:
15.1
epididymis:
36.6
kidney:
18.8
AQP2
ENSSSCG00000021193
ENSG00000167580
Aquaporin-2
Group enriched
Detected in some
kidney:
212.6
male glands:
103.9
AQP6
ENSSSCG00000000212
ENSG00000086159
Aquaporin-6
Tissue enriched
Detected in many
kidney:
35.0
ATP6V0D2
ENSSSCG00000006138
ENSG00000147614
ATPase H+ transporting V0 subunit d2
Tissue enhanced
Detected in some
dura mater:
21.1
endometrium:
29.5
kidney:
12.3
BSND
ENSSSCG00000020989
ENSG00000162399
Barttin CLCNK type accessory beta subunit
Tissue enriched
Detected in some
kidney:
43.8
CASR
ENSSSCG00000011878
ENSG00000036828
Extracellular calcium-sensing receptor
Tissue enhanced
Detected in all
kidney:
24.5
pituitary gland:
23.8
CCDC151
ENSSSCG00000013625
ENSG00000198003
Coiled-coil domain containing 151
Group enriched
Detected in many
kidney:
30.6
male glands:
44.2
thyroid gland:
49.5
CDH16
ENSSSCG00000022721
ENSG00000166589
Cadherin 16
Tissue enriched
Detected in some
kidney:
124.9
CER1
ENSSSCG00000039169
ENSG00000147869
Cerberus 1, DAN family BMP antagonist
Tissue enhanced
Detected in some
choroid plexus:
7.6
kidney:
18.6
CLDN16
ENSSSCG00000024788
ENSG00000113946
Claudin-16
Tissue enriched
Detected in single
kidney:
19.2
CLTRN
ENSSSCG00000035893
ENSG00000147003
Collectrin, amino acid transport regulator
Group enriched
Detected in many
choroid plexus:
29.1
kidney:
57.5
COLQ
ENSSSCG00000028911
ENSG00000206561
Collagen like tail subunit of asymmetric acetylcholinesterase
Tissue enhanced
Detected in many
kidney:
19.9
CUBN
ENSSSCG00000011030
ENSG00000107611
Cubilin
Tissue enriched
Detected in some
kidney:
124.4
DMRT2
ENSSSCG00000005233
ENSG00000173253
Doublesex and mab-3 related transcription factor 2
Tissue enhanced
Detected in some
adipose tissue:
28.1
kidney:
17.9
mesothelial tissue:
9.1
upper respiratory system:
9.8
DUSP9
ENSSSCG00000012774
ENSG00000130829
Dual specificity phosphatase 9
Group enriched
Detected in some
adrenal gland:
13.2
kidney:
32.4
ERAS
ENSSSCG00000028452
ENSG00000187682
ES cell expressed Ras
Tissue enriched
Detected in some
kidney:
21.6
FAM151A
ENSSSCG00000036649
ENSG00000162391
Family with sequence similarity 151 member A
Tissue enriched
Detected in some
kidney:
50.8
FXYD2
ENSSSCG00000015084
ENSG00000137731
Sodium/potassium-transporting ATPase subunit gamma
Tissue enriched
Detected in some
kidney:
108.6
GNAT3
ENSSSCG00000015406
ENSG00000214415
G protein subunit alpha transducin 3
Tissue enhanced
Detected in some
brain:
4.6
kidney:
7.4
GRB14
ENSSSCG00000015901
ENSG00000115290
Growth factor receptor bound protein 14
Tissue enhanced
Detected in many
adrenal gland:
78.9
liver:
34.4
testis:
29.8
HDAC6
ENSSSCG00000025545
ENSG00000094631
Histone deacetylase 6
Tissue enriched
Detected in all
kidney:
96.2
HMX2
ENSSSCG00000010725
ENSG00000188816
H6 family homeobox 2
Tissue enhanced
Detected in some
brain:
6.6
kidney:
15.4
stomach:
3.4
INSRR
ENSSSCG00000006465
ENSG00000027644
Insulin receptor related receptor
Tissue enhanced
Detected in some
adrenal gland:
4.3
kidney:
16.6
KCNJ1
ENSSSCG00000015236
ENSG00000151704
Potassium voltage-gated channel subfamily J member 1
Tissue enriched
Detected in single
kidney:
62.1
KLK1
ENSSSCG00000024668
Kallikrein-1 precursor
Tissue enriched
Detected in some
salivary gland:
400.8
LHX1
ENSSSCG00000017692
ENSG00000273706
LIM homeobox 1
Group enriched
Detected in some
brain:
13.0
kidney:
25.7
male glands:
21.8
LRP2
ENSSSCG00000040746
ENSG00000081479
LDL receptor related protein 2
Tissue enriched
Detected in many
kidney:
179.2
MCCD1
ENSSSCG00000023018
ENSG00000204511
Mitochondrial coiled-coil domain 1
Group enriched
Detected in some
epididymis:
91.0
kidney:
72.1
MCOLN3
ENSSSCG00000023745
ENSG00000055732
Mucolipin 3
Group enriched
Detected in many
kidney:
28.1
lung:
10.5
thyroid gland:
14.8
na
ENSSSCG00000000593
Group enriched
Detected in some
kidney:
11.9
skin:
10.2
na
ENSSSCG00000005874
Tissue enriched
Detected in some
kidney:
12.0
na
ENSSSCG00000006147
Tissue enriched
Detected in single
kidney:
25.7
na
ENSSSCG00000006148
Tissue enriched
Detected in some
kidney:
54.4
na
ENSSSCG00000010328
Tissue enhanced
Detected in some
brain:
1.6
kidney:
1.6
male glands:
1.9
na
ENSSSCG00000011140
Tissue enhanced
Detected in some
epididymis:
5.7
gallbladder:
8.8
male glands:
5.0
salivary gland:
4.2
na
ENSSSCG00000012668
Group enriched
Detected in some
endometrium:
4.1
kidney:
7.0
na
ENSSSCG00000014212
Group enriched
Detected in some
epididymis:
51.6
kidney:
26.3
na
ENSSSCG00000014911
Tissue enhanced
Detected in many
adipose tissue:
6.5
choroid plexus:
5.0
na
ENSSSCG00000016791
Tissue enhanced
Detected in some
heart:
2.9
kidney:
8.3
skin:
4.4
na
ENSSSCG00000021041
ENSG00000162877
N-fatty-acyl-amino acid synthase/hydrolase PM20D1
Tissue enriched
Detected in many
kidney:
122.9
na
ENSSSCG00000022629
Group enriched
Detected in some
endometrium:
3.9
kidney:
4.1
na
ENSSSCG00000025951
Tissue enriched
Detected in single
kidney:
5.5
na
ENSSSCG00000026345
ENSG00000184908,ENSG00000186510
Tissue enriched
Detected in some
kidney:
62.1
na
ENSSSCG00000029248
ENSG00000184999
Tissue enriched
Detected in some
kidney:
40.1
na
ENSSSCG00000029661
ENSG00000106355
Group enriched
Detected in some
kidney:
4.4
pituitary gland:
3.6
skin:
6.1
na
ENSSSCG00000030133
Tissue enhanced
Detected in some
kidney:
3.6
liver:
1.9
testis:
3.1
na
ENSSSCG00000031357
Group enriched
Detected in some
kidney:
4.4
lymphoid tissue:
1.7
male glands:
4.0
na
ENSSSCG00000031585
Group enriched
Detected in some
breast:
4.0
kidney:
3.5
ovary:
1.2
pituitary gland:
1.2
testis:
2.0
na
ENSSSCG00000031747
Group enriched
Detected in many
kidney:
15.0
skin:
18.2
na
ENSSSCG00000031783
Tissue enhanced
Detected in some
kidney:
5.9
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